PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g13840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family DBB
Protein Properties Length: 194aa    MW: 21199.6 Da    PI: 5.2465
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g13840genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.59.6e-07445540
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                +C+ ++e++ + +C+++  +lC +C  + H+       H+++
  CA09g13840  4 ICEYCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSRT 45
                7*****************************657777777765 PP

2zf-B_box26.31.5e-084689440
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40
                 +C++++++++   C + ++ lC++C  ++H +       H+++
  CA09g13840 46 LICERCNSQPAVVRCIEERTSLCQNCDWSGHASsssgstmHKRQ 89
                69*****************************7778888888875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
CDDcd000215.19E-7447No hitNo description
SMARTSM003364.4E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9164391IPR000315B-box-type zinc finger
CDDcd000218.14E-44773No hitNo description
SMARTSM003362.84891IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGYICEYCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLICER CNSQPAVVRC  60
IEERTSLCQN CDWSGHASSS SGSTMHKRQA LSSYTGCPSA AELSNIWSFL LDDPSVGDTC  120
EQRMGSMSIN DNRPRDGQDP QGKDNSQNVF AAVEVSEMNI SDKSNLLMES SMPTFDNKLH  180
NLEPPIGSSS KVI*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554514.11e-139PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_016554513.11e-139PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_016554512.11e-139PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_016554511.11e-139PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_016554510.11e-139PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE52e-62COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLK4DBG11e-123K4DBG1_SOLLC; Uncharacterized protein
TrEMBLA0A0V0ILA21e-123A0A0V0ILA2_SOLCH; Putative zinc finger protein CONSTANS-LIKE 9-like
STRINGSolyc12g006240.1.11e-123(Solanum lycopersicum)
STRINGPGSC0003DMT4000741421e-122(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.44e-60CONSTANS-like 9